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An Update from NDSR Residents

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April was a busy month for all of us residents! We attended and presented at two conferences in two different cities: first, at the 4th annual DPLAFest in Chicago and then the NDSR Symposium in Washington D.C. the following week. Our presentations at these two conferences challenged us to think in new ways and demonstrated the support that the cohort and mentor model is designed to provide. In between preparing for and presenting at conferences, we have also been progressing on our projects and at our host institutions.

L to R Ariadne, Pam, Marissa, Katie and Alicia

The NDSR Symposium was a great complement to DPLAFest, which was more of a large-scale snapshot of projects and practices in managing digital libraries. The Symposium, by contrast, felt very meta – this was past, present, and future residents, mentors, and hosts as well as IMLS staff and other individuals involved in creating and supporting the NDSR program looking inwards on what has been done and what we want the program to become in the near future. Despite the inward-focus, wider themes and issues were obviously discussed, especially by the keynote speakers, who stressed the importance of human-information interaction, community-building, and participatory leadership. We left the Symposium feeling empowered to advocate for not only the NDSR Program but also the IMLS and data preservation communities as a whole. Check out our DPLAfest and NDSR Symposium reflection blog post to learn more about our experiences and our presentations.

Ariadne’s project focuses on access to illustrations in BHL’s corpus of biodiversity literature. In her latest update, she shares lessons from conversations with Research Department staff at the Missouri Botanical Garden and with BHL stakeholders and a fundamental look into BHL’s current illustration crowdsourcing efforts on Flickr and Science Gossip. Crowdsourcing, user experience, and data curation will all play important roles in her next steps: speaking with BHL’s crowdsourcing volunteers, preparing the metadata for improved access, and hopefully, anticipating future possibilities for metadata creation.

Katie is also investigating crowdsourcing methods to transcribe manuscript items in BHL. Translating images of handwritten content into machine readable data that can be searched, sorted, and otherwise manipulated had not received much attention until crowdsourcing, citizen science, and other types of community collaboration models and platforms were constructed. Defining transcription activities is useful for understanding some of the competing elements when considering whether and how to transcribe digitized items.

Transcription helps bridge the gap between digitization and use by enhancing access through full text search, enriching metadata collection, and opening collections to digital textual analysis. Digitized natural history manuscript items are largely hidden due to the lack of item level description for most archival collections. While minimal processing is certainly the better option compared to maintaining an extensive backlog of unprocessed material, digitized handwritten documents are not discoverable based on their unique content without a machine readable facsimile. Indexing transcriptions facilitates discovery of historical records and improves catalog search results. By offering full text transcriptions, the digital collections are opened up to new types of searching, sorting, categorizing, and pattern finding. Research derived from these new data sets can illustrate changes over time across much larger magnitudes of collections and types of information resources.

Alicia got the chance to learn more about the management at a botanic garden by visiting the Living Plant Documentation department at the Chicago Botanic Garden. The CBG maintains records much like museums do, however, the collection items at CBG happen to be living (and thus can die, move, create new items, etc.). Each plant that enters the collection is given an accession number and deemed to be a member of the permanent collection or given “seasonal” status as a part of a temporary collection (like the orchids that were on view in the orchid show that closed at the end of March). This data is all managed through an internal database and used to populate the garden’s app, GardenGuide, and the web applications, What’s in Bloom and Plant Finder.

Marissa has been working on getting article metadata added to the journal Contributions in Science, a publication of the Natural History Museum of Los Angeles County. The entire run of the journal from 1957 to present has been digitized and added to BHL, but without metadata describing each individual article, the journal isn’t searchable. The process of making it searchable has involved using Python code, EndNote, and getting lots of help from BHL staff and volunteers, so stay tuned for an upcoming blog post about this work in progress!

Pam has been getting to know the BHL users and will be sharing a post on the NDSR at BHL blog soon about the different types of users working with BHL. There are three distinct groups of users - those affiliated with the BHL consortium, those who use BHL at the system level, and then individual researchers. Pam is developing surveys and will possibly use other methods as well to solicit feedback from each of these user groups. She will also be taking a close look at all user submitted feedback through the BHL website as well as Google Analytics for the BHL website. Be on the lookout for an upcoming blog post about this work!

DPLA Reharvest of BHL Data

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On April 11, 2017 the Digital Public Library of America (DPLA) reharvested all BHL data for ingest into its portal at https://dp.la/.

While BHL has served as a content hub for DPLA since its launch in 2013, our data has not been updated in their portal since that launch, primarily due to the absence of a workflow on DPLA’s end for automatically harvesting new data. Since 2013, the number of BHL records in our portal has increased significantly and changes and corrections to pre-2013 records were not reflected in the DPLA portal. This new harvest not only captures new data but also ingests updates to existing records.

View of BHL records from DPLA's first harvest--these lack the thumbnail

Before the harvest, BHL had 123,472 items in DPLA. After the reharvest, BHL now has over 187,000 items in DPLA. This not only represents a 52% increase in BHL records in DPLA, but more importantly, the quality of those records has improved and is now in sync with BHL.

From the perspective of DPLA visitors, the most noticeable change is the addition of thumbnail images, which were lacking in DPLA prior to the reharvest. Going forward, DPLA will automatically reharvest BHL data on a bi-monthly schedule.

View of BHL records from DPLA's recent harvest, which includes thumbnails
Why is it important for our data to be in DPLA? BHL wants its data represented in DPLA because it supports our mission to make biodiversity literature as openly available and accessible as possible. DPLA exposes BHL content to new audiences who otherwise may not be aware of our existence and emphasizes the richness of U.S. national collections, which helps underscore the value of libraries for both American and global citizens.

You can explore BHL’s collection in DPLA and many others here.

Trish Rose-Sandler & Bianca Crowley

The Serendipitous Discovery of Susan Fereday: A Story about the Impact of Citizen Science

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By Siobhan Leachman 
BHL Citizen Scientist (Learn more
Twitter: @SiobhanLeachman

Self Portrait, Susan Fereday. National Library of Australia. Source: WikiCommons.

I love volunteering for the Biodiversity Heritage Library. I taxo tag images in the BHL Flickr account. This assists the use of these images by BHL as well as other institutions that use BHL content. It is also my favorite way of exploring BHL. I get a real thrill out of the serendipitous discoveries I make while tagging.

My most recent BHL adventure resulted from tagging an album of images from the boringly named but absolutely fabulous Botany of the Antarctic voyage of H. M. discovery ships Erebus and Terror in the years 1839-1843. Amongst the many images in this album was one of a particular species of seaweed - Nemastoma feredayae.

Nemastoma feredayae. Art by William Henry Harvey. The botany of the Antarctic voyage of H.M. discovery ships Erebus and Terror in the Years 1839-1843. http://biodiversitylibrary.org/page/28467702. Digitized by the Missouri Botanical Garden.

I tagged the image with the species name given, and then I attempted to confirm the current name of the seaweed. In doing so, I stumbled across the fact that the seaweed was named in honor of Mrs. Susan Fereday. Who was this mystery woman?

Unable to resist going down that rabbit hole, I googled her. I discovered that Susan Fereday emigrated to Tasmania, Australia from England in 1846. She was a talented artist. So talented, her artwork is now in the collection of the National Library of Australia. She concentrated on painting beautiful images of fauna and flora in and around the area where she lived.

Hibbertia sericea by Susan Fereday. National Library of Australia. Source: WikiCommons.

She was also a keen collector of seaweed specimens. She corresponded with and sent specimens to one of the foremost experts in algae of the day, William Henry Harvey. Harvey in turn honored Fereday’s contribution to the study of algae by naming two species after her. It was the image of one of those species drawn by Harvey that I had tagged in the BHL Flickr feed.

Portrait of William Henry Harvey. Oliver, F. W. (Francis Wall). Makers of British botany. (1913). http://www.biodiversitylibrary.org/page/1073575. Digitized by MBLWHOI Library.

While researching Fereday, I was disappointed to see she did not have Wikipedia page. Being a keen Wikipedian, I decided to rectify this. While drafting her article, I realized that several sources had different dates as her birth date. I emailed the National Library of Australia via their “Ask a Librarian” service to ask them to help me confirm that their records were correct.

I received a fabulously researched reply from Damien Cole, one of their librarians. He discovered that the birth date confusion was due to Susan Fereday having a sister of the same name, who had died prior to our Susan being born. Fereday was actually born in 1815! As a result of this research, the National Library subsequently edited their records to give Susan Fereday her birth date, and I obtained a reputable citation supporting that information for Fereday’s Wikipedia article.

The National Library of Australia has also shared the changes they made to their database with the Australian National Herbarium as well as Design and Art Australia Online. The Library even went so far as to contact the Encyclopedia of Australian Science to inform them of the Wikipedia article in the hope that that organization might also consider including Fereday in their website.

All of this resulted because the MBLWHOI Library (the Marine Biological Laboratory and the Woods Hole Oceanographic Institution Library) scanned the volumes on the Antarctic voyage of H. M. discovery ships Erebus and Terror and made them available to BHL. Because BHL added the images from those volumes to Flickr, I was able to tag them.

It just goes to show that when you mix citizen science with digitization and the ability to freely reuse content, everyone benefits.

I would love it if people joined me in taxotagging BHL Flickr images. Instructions can be found here.

Anyone can create or improve Wikipedia. For a beginner's guide, see this article.

And if you think you can add to and improve Susan Fereday’s article, go for it!

Do Birds and Mammals Destroy Fish Populations? One 19th Century Naturalist Was Commissioned to Find Out.

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By Amy Zhang and Tomoko Y. Steen, Ph.D.
Library of Congress

Belted Kingfisher. Warren, Benjamin Harry. Some Birds and Mammals which Destroy Fish and Game. Clarence M. Busch, state printer of Pennsylvania, 1897. Digitized by The Library of Congress. http://www.biodiversitylibrary.org/page/29736925. Illustration reproduced from Audubon's Birds of America.

In the wake of the Quakers’ immigration to North America, a taste for the study of nature came “quietly” into being among descendants from the “tolerant” zones, notably the Commonwealth of Pennsylvania.

In the biographical notes from a 1919 introduction to the ornithology of Chester County, Pennsylvania, the active local ornithologists were concentrated in neighborhoods “settled largely by the English, Welsh, Scotch-Irish and German members of the Society of Friends, commonly called ‘Quakers’.” Publications in that period say the study of the natural sciences seemed “peculiarly agreeable.” Among these naturalists is Dr. Benjamin Harry Warren, the author of our featured book – Some Birds and Mammals which Destroy Fish and Game.

A West Chester native born in 1858, Warren was a productive ornithologists whose work was widely cited by ornithology monographs and papers during that period. During his youth, Warren had experienced an already bourgeoning field of Ornithology in Chester County. Since the late eighteenth century, some incipient ornithologists of the area had started searching for materials and accumulating specimens, with the help of taxidermists.

West Chester became home to the Chester County Cabinet of Science as early as the 1820s, and only about a decade later, the ornithological department acquired “the first nearly complete collection of local birds in the county”. There was, however, no catalogue of this collection; and the first county bird list was published much later in the 1860s. “If the second quarter of the nineteenth century failed of being the golden period of ornithology in Chester County,” the author of Chester Ornithology wittily remarked in the biographical notes, “it was due to Quaker modesty”.

Portrait of Benjamin Harry Warren. The Ornithology of Chester County, Pennsylvania. RG Badger, 1919. Digitized by Cornell University Library. http://www.biodiversitylibrary.org/page/37769995.

Before commissioned by the Department of Agriculture to investigate “the damage done by the fish-destroying birds and mammals”, Warren was already a professional “birder.” He published a list of 218 bird species in 1879-1880, and worked continuously to update the repository. Though his contemporary Witmer Stone – who served as president of the American Ornithologists' Union (AOU), editor of the AOU's periodical The Auk, and was also a botanist– may be a better-known ornithologist, Warren’s Report on the Birds of Pennsylvania was considered one of the first major works on Pennsylvania ornithology.

During Warren’s time, “birders” actively collected bird specimens – rather different from the aesthetics of the “non-collecting” birding preferred by modern ornithologists after the turn of the century. For his Report on the Birds of Pennsylvania, Warren, a medical doctor, dissected and examined over four thousand bird stomachs. In Some Birds and Mammals which Destroy Fish and Game, as the main research was to dissect the animal’s diet and evaluate if the species is piscivorous (fish-eating), post-mortem viscera examination was again the main approach.

To evaluate the extent to which birds and mammals damage the local fish populations, Warren spent three years collecting data from reliable sources. For this project, the Department of Agriculture reached out to the public by distributing circular notes asking for personal experiences related to the fish-damaging behavior of wild animals. Thus, Warren included in the report a number of correspondences with local farmers, fishermen and naturalists, in addition to his own study.

The Mink. Warren, Benjamin Harry. Some Birds and Mammals which Destroy Fish and Game. Clarence M. Busch, state printer of Pennsylvania, 1897. Digitized by The Library of Congress. http://www.biodiversitylibrary.org/page/29736933.

Warren concluded, from diet analyses and population survey, that birds and mammals overall played an insignificant role in fish decline. The real threat to local fish loss was illegal fishing. A long-standing misunderstanding, as it turned out, could only be effectively corrected by scientific evidence.

Fish Hawk. Warren, Benjamin Harry. Some Birds and Mammals which Destroy Fish and Game. Clarence M. Busch, state printer of Pennsylvania, 1897. Digitized by The Library of Congress. http://www.biodiversitylibrary.org/page/29736918.

The initiative of this research appears anthropocentric, but through careful investigation, valuable information on morphology, diet and behavior of the local wildlife was gathered. Warren not only presented in detail the characters of each species with carefully drawn colored-illustrations (which were reproduced from other sources, including Audubon's Birds of America), but also weaved vivid “behavioral dramas” into his artful account of species interactions. The excerpt below shows a gripping story exemplifying antagonism between two raptors:
“…Perched on some tall summit, in view of the ocean, or of some water-course, he (the Bald Eagle) watches every motion of the Fish Hawk while on wing. When the latter rises from the water, with a fish in its grasp, forth rushes the eagle in pursuit. He mounts above the Fish Hawk, and threatens it by actions well understood, when the latter, fearing perhaps that its life is in danger, drops its prey. In an instant the eagle, accurately estimating the rapid descent of the fish, closes his wings, follows it with the swiftness of thought, and the next moment grasps it.”
Bald Eagle. Warren, Benjamin Harry. Some Birds and Mammals which Destroy Fish and Game. Clarence M. Busch, state printer of Pennsylvania, 1897. Digitized by The Library of Congress. http://www.biodiversitylibrary.org/page/29736916.

In addition, readers could find bits of cultural elements sprinkled through the book – charming bird-lores and superstitions, such as the Tartars’ belief that touching a woman with a kingfisher’s feather would make her fall in love with them.

These cultural myths, beautiful yet unrealistic, remind us of the hidden theme of the book: the relationship between man and nature. Works like Warren’s Some Birds and Mammals which Destroy Fish and Game demonstrate the ardent and indefatigable efforts of early naturalists to capture these relationships and expand our knowledge of the natural world.

References

A New Scanner for Digitizing Australia’s Biodiversity Heritage

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By Nicole Kearney 
Coordinator, BHL Australia

New Zeutschel OS 16000 scanner purchased by BHL Australia. Book being digitized is: The animal kingdom of the Baron Cuvier, enlarged and adapted to the present state of zoological science. 1839. By Baron Georges Cuvier. Photo Credit: Nicole Kearney.

In 2011, Australia joined the Biodiversity Heritage Library and, led by Museums Victoria, began to digitize the rare books, historic journals and archival material related to Australia’s biodiversity, and to make them openly available online.

There are now 15 Australian organizations contributing to BHL and over 300 worldwide. These include museums, herbaria, royal societies, field naturalists clubs and government organizations.

Just this week the number of volumes digitized for BHL by Australian organizations surpassed 1,000, amounting to over 200,000 pages. The great majority of this digitization work was done by the BHL Australia team at Melbourne Museum. We have a fabulous team of volunteers who scan the pages and prepare the digitized books for upload online.

BHL Australia volunteers with Museums Victoria CEO Lynley Marshall (center) in front of the new BHL Australia scanner. Photo Credit: Nicole Kearney.

In the 6 years we have been doing this work, there have been dramatic advances in digitization technology, both in hardware and in software. We are therefore very excited to announce that BHL Australia has just purchased a new scanner.

Museums Victoria CEO Lynley Marshall scanning the first page for BHL Australia on the new scanner. Photo Credit: Nicole Kearney.

To celebrate the arrival of the new scanner, the Museums Victoria (MV) library hosted an Open House on 24 May, inviting MV staff to learn more about BHL, see a display of rare books from the MV collection, and see the new scanner.

Visitors exploring rare books from the MV collection during the Open House. Book on display is: Thesaurus rerum naturalium. 1734-1765. By Albertus Seba. Photo Credit: Nicole Kearney.

The scanner, a Zeutschel OS 16000, will increase both the quality and quantity of our scanning work, and will automate much of our post processing. This will allow us to further expand our project and to make even more of Australia’s biodiversity heritage literature available online, so stay tuned for the next 200,000 pages!

Peruse the BHL Australia collection.

BHL Australia is funded by the Atlas of Living Australia.

Eye-catching photos, drawings and clippings: a few highlights from the BHL Field Notes Project

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By Adriana Marroquin
Project Manager, BHL Field Notes Project

The Field Notes Project collection is now over 400 items strong! We are excited by our progress and to share these field books to the global natural history community. For our feature this month, I would like to highlight some of the unexpected or eye-catching pages our digitization teams have come across so far.


Schuchert, Charles. Field Notebook: Bermuda, New Brunswick, Quebec, Vermont 1929. (1929)
http://biodiversitylibrary.org/page/53322443. Digitized by Yale Peabody Museum of Natural History.

This photo of a dune structure initially caught my eye because it’s a great looking photo, but then I noticed the bike for scale and it was even more impressive than it already was! The accompanying caption notes the structure is just north of Pembroke Marsh in Bermuda.


Schuchert, Charles. Field Notebook: Florida. 1911, 1912. (1911-1912)
http://biodiversitylibrary.org/page/53475959. Digitized by Yale Peabody Museum of Natural History.

This newspaper clipping was also inserted in one of Charles Schuchert’s field books. The other side of the page has an article about the completion of the Florida East Coast Railway to Key West, but the true star is this piece on the latest New York dance craze, The Turkey Trot.


Bryan, Edwin Horace. Chronological summary and guide to Whitney Expedition journals.
http://biodiversitylibrary.org/page/53430449. Digitized by the American Museum of Natural History.

The cover of this summary takes advantage of the American Museum of Natural History’s pre-printed address labels. The illustrated horse and human look like the skeletal version of a 18th-century battle painting. That’s bit war heavy, so I’d like to think they are just really excited to collect in the field!


George Engelmann : botanical notebook 5 : Mammilaria, Leuchtenbergia, Discocactus, and Melocactus. Box 3: Folder 13: Cactaceae: Mammillaria: 1857-1883. (1856) http://biodiversitylibrary.org/page/52030722 Digitized by the Missouri Botanical Garden Peter H. Raven Library.

George Engelmann’s field books have a number of illustrations, but I find myself coming back to this small cactus for no other reason than it’s a cute little drawing.


Grinnell, Joseph. Notebook #1: Los Angeles County, California, 1894-1895. (1894-1895)
Contributed by Museum of Vertebrate Zoology, University of California, Berkeley.

This notebook from Joseph Grinnell’s college years may not be initially eye catching, but considering his famed note-taking style, I knew it would be intriguing upon reading. I found he could be very expressive in style in his diary entries. In this page he notes seeing a Parkman’s wren and how it was “hollering for all it’s worth.” I wonder if the wren ever found the mate he was surely trying to attract. In the next entry he shows great pleasure in the clear, warm weather. Considering it was March in Los Angeles County, I can imagine it was “fine collecting weather” indeed.

There’s plenty more to discover in the BHL Field Notes Collection. Let us know what piques your interest!

The BHL Field Notes Project is funded by the Council on Library and Information Resources (CLIR).
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Overdue Thanks and Recognition for Rusty Russell and Lesley Parilla

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This post originally appeared on the Smithsonian Field Book Project blog.

Since its inception, the Field Book Project has evolved from a single project focused on cataloging Smithsonian collections into a growing portfolio of projects, at first focusing on enhancing access to those same collections through conservation and digitization of the Smithsonian materials, and now as a multi-institutional digital initiative to provide open access to field notes through the Biodiversity Heritage Library. As with so many long-term projects or programs, staff have come and gone over the years. Many of those staff have made significant contributions and we try to share adequate thanks and acknowledgment for each.

Two individuals who were especially key to the project’s success—Rusty Russell, one of the original PI’s, and Lesley Parilla, the project’s longest serving cataloger—recently moved on to new positions. Both were integral to the project and we couldn’t be more grateful for their contributions. So with great pleasure, the current project team extends both their congratulations on the next phase of their respective careers and acknowledgement to both for their contributions.

Rusty Russell
In fact, when we look back it’s truly hard to imagine the Field Book Project taking off in quite the way it did without Rusty’s own intellectual investment and collaborative spirit. At the time the project kicked off, Rusty was serving as Collections Manager in the Department of Botany in the Smithsonian National Museum of Natural History. In many ways, it was his interest in the United States Exploring Expedition, also known as the Wilkes Expedition, and his efforts to track down some of the original source materials that became a major impetus for the project. A four-year voyage from 1838-1842, the Wilkes Expedition covered an impressive expanse of land and sea, including regions of the Pacific Northwest, down to Tierra del Fuego, on to Antarctica, not to mention the Fiji Islands. The expedition resulted in one of the largest, early collections of natural history specimens and artifacts—related not just to botany, but also ornithology, marine biology, anthropology and other fields—to be deposited in what was then known as the National Museum.

As with so many expeditions and other collecting events, over time the field notes and other original documentation from this expedition had become separated from the specimens and artifacts. If you’ve been following the Field Book Project blog, you already know that scientists’ field notes can be especially tricky to track down as they are often treated as what we refer to as “ancillary collections”, that is material that might support understanding of the main collections but because of their format are generally not managed using the same catalogs as those collections. As a result, field notes might be found in libraries, archives, or curators’ offices. And it can be quite difficult to know not only which department to start with but even which museum. Thus it can quickly become a wild goose chase.

For Rusty, though, rather than simply focusing all of his time and energy on finding the field notes relevant to his own interests, he started asking the bigger question: how can we make these kinds of materials easier to find in general?

Those who know Rusty will not be surprised that he approached the question in his typical collaborative fashion and began discussing possible strategies with colleagues both within and beyond the Smithsonian. Then, in 2009, he and Anne Van Camp, Director of Smithsonian Institution Archives, submitted a successful grant proposal to the Council on Library and Information Resources (CLIR). As enthusiasm for the project spread, additional funding was brought in to support conservation and digitization of Smithsonian field notes, thanks to Smithsonian Women’s Committee, Save America’s Treasures, and others. More recently, the Arcadia Fund also provided generous funding, enabling us to continue both cataloging and digitizing Smithsonian field book collections, and CLIR has provided additional support to collaborate across 10 institutions to digitize and provide open access to their field note collections as well.

Lesley Parilla
Lesley Parilla was one of our first catalogers, joining the project in 2011 as part of that first CLIR grant, so she was with us as the project continued to evolve. Lesley was already part of the Smithsonian family when she started, having worked as part of the Entomology Department where she took on a variety of tasks, including creating finding aids for field books and oral histories. Her transition to the Field Book Project seemed a natural fit!

In her six years with us, Lesley helped catalog almost half of the field books cataloged for the project so far. That’s over 4000 field book records! Not to mention the over 700 related collection and authority records she created as well. To say that Lesley’s work has increased the discoverability of Smithsonian’s field books would be an understatement. As the project progressed, Lesley also started taking on more responsibilities beyond cataloging, from managing the field book record database and website, to creating project documentation and training our interns. To better reflect her increased responsibilities, in 2015 Lesley became our Cataloging Coordinator, juggling her cataloging work along with the other behind-the-scenes tasks.

A great thing about having Lesley on the project was her knack for stories. She was always coming across interesting stories and threads when cataloging, and was happy to share her finds. She was a regular contributor to our different social media outlets (including this blog) where she would write about the fascinating things she found while cataloging field books. The topics that could pique her interest spanned the gamut. One day she could write about how the study of an expedition is supported by field books, herbarium sheets and published material, the next she would share an illustration of Albatross courtship behavior, and finally she’d write about how often researchers seemed to come across moonshiners in the field. Regardless of the topic at hand, what was always evident was Lesley’s enthusiasm for the project, the field books, and the researchers. Lesley’s eye for interesting details was our gain. This compelling storytelling wasn’t limited to the Field Book Project social media accounts. Lesley is a gregarious storyteller, and on any given day will have something new to share with friends and coworkers, be it about the material she is cataloging or the career of chef Jacques Pépin. Lesley moved on earlier this year to become an original cataloger for Smithsonian Libraries. While we were sad to see her leave the project, we are so happy her skills and enthusiasm will be supporting the Smithsonian in other ways.

Rusty has also since moved on and is now Director of the Gantz Family Collections Center at the Field Museum of Natural History. While we miss having Rusty at the Smithsonian, we are incredibly happy for him and the Field Museum. It is also perhaps a bit serendipitous for us, too, as the Library at the Field Museum is not only a BHL Member but also one of the partners on the current CLIR grant. So we’re feeling pretty lucky that they have a new leader in their corner who understands and loves field notes as much as we do.

So a hearty congratulations to Rusty and Lesley and warmest wishes to you both from the Smithsonian Field Book Project and BHL Field Notes Project teams!

BHL at XXI AETFAT 2017 in Nairobi, Kenya

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Last month, the BHL Program Director Martin R. Kalfatovic and Program Manager Carolyn A. Sheffield participated in multiple events throughout different regions of Kenya to help promote BHL to existing and potentially new users, connect with our BHL Africa partners, and explore opportunities for growing partnerships in the region.  We will be highlighting each event with its own blog post throughout the week, starting with the first stop in Nairobi, Kenya.

From 15-19 May 2017, the National Museums of Kenya and the Catholic University of East Africa (CUEA) co-hosted the XXI AETFAT (Association for the Study of Tropical Flora of Africa) Congress. Held on the beautiful campus of CUEA, the Congress brought together approximately 250 individuals from around the world to meet and discuss research on various aspects of the botany of tropical Africa.  BHL participated with a symposium Botanical Contributions from the Biodiversity Heritage Library: A Focus on Africa, which focused on digital library resources related to the conference topics.


Martin R. Kalfatovic at the podium for the BHL symposium
 at XXI AETFAT 2017
The symposium was led by BHL Program Director, Martin R. Kalfatovic and also included presentations from BHL Program Manager, Carolyn Sheffield and Director of JSTOR Primary Sources, Deirdre Ryan. 

Kalfatovic opened the session with an introduction to BHL, entitled Biodiversity Heritage Library: Empowering Discovery Through Free Access to Biodiversity Knowledge. Kalfatovic also delivered a presentation on behalf of Grace Costantino entitled The Story of Engagement: Outreach Strategies at the Biodiversity Heritage Library.  
In Building the Biodiversity Heritage Library Through Standards and Content, Sheffield reported on strategies and results from BHL Workshops, highlighting involvement and new contributions from BHL Africa partners.  

Ryan delivered an overview of JSTOR entitled “Journals, AETFAT, African Plants, and more...,” covering the scope and breadth of JSTOR collections, including 2,600 journal titles which are made freely available to all non-profit and educational institutions in Africa through the African Access Initiative.  Additionally, she highlighted results of the African Plants Initiative that grew into the Global Plants Initiative and has brought digitized herbarium sheets into the JSTOR collection, many of which link to BHL!  She also identified the AETFAT Congress as a historically significant event for JSTOR, where some of the founding ideas first germinated.  Kalfatovic then concluded the session and opened it up for questions.  


Carolyn Sheffield and Ben Nakitare at the NMK booth
      at the XXI AETFAT 2017 exhibits
Approximately 20 people were in attendance at the session and discussions were fruitful, focusing on both BHL work to date and potential future opportunities. 

In addition to the symposium, the conference provided several other opportunities for productive discussions with both BHL users and also with several BHL Africa partners.  It was especially lovely to catch up with some of our colleagues from National Museums of Kenya who hosted and participated in the BHL Africa Workshop in 2015, including Dr. Geoffrey Mwachala, Dr. Asha Owano, Lawrence Monda, and Ben Nakitare. We are thrilled with their ongoing commitment to participate in BHL, and we look forward to continued collaborations with our partners at National Museums of Kenya and all of our BHL Africa partner institutions!  


Changes Coming to the BHL API on 12 June 2017

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The BHL API will be updated on 12 June 2017. The current Contributor element will be replaced with a HoldingInstitution element in the result sets of the following API methods:

GetItemMetadata
GetItemByIdentifier
GetTitleMetadata
GetTitleItems
BookSearch
NameGetDetail

Here is an example of the change:

Current API Response:

<Contributor>MBLWHOI Library</Contributor>
<RightsHolder>MBLWHOI Library</RightsHolder>
<ScanningInstitution>MBLWHOI Library</ScanningInstitution>

New API Response:

<HoldingInstitution>MBLWHOI Library</HoldingInstitution>
<RightsHolder>MBLWHOI Library</RightsHolder>
<ScanningInstitution>MBLWHOI Library</ScanningInstitution>

Detailed documentation for the BHL APIs is available at http://www.biodiversitylibrary.org/api2/docs/docs.html. It will be updated to reflect these changes after they are moved into production on 12 June 2017.

Learn more about BHL's developer tools and services here.

If you have questions, please feel free to submit feedback via this form.

Promoting Scholarly Publication Data and the Biodiversity Heritage Library in Kenya with a Special Presentation at the U.S. Embassy, Nairobi

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In May 2017, while attending the XXI Congress of the Association for the Taxonomic Study of the Flora of Tropical Africa (AETFAT), Smithsonian Libraries' (SIL) staff Martin R. Kalfatovic and Carolyn A. Sheffield received a speaking invitation for the Embassy of the United States of America, Nairobi, Kenya from Tatum Albertine (Environment, Science, Technology & Health Officer).

The Embassy is located in Gigiri, north of the Nairobi central business district, about a two hour drive in Nairobi traffic from the Karen neighborhood where the AETFAT Congress was being held. The program was held in the American Reference Center (ARC) on the Embassy campus. The ARC serves students, teachers, researchers, journalists, business professionals and individuals simply interested in broadening their horizons on any topic.

The purpose of the talk was to provide a wider Kenyan community with information about the Biodiversity Heritage Library and services provided by Smithsonian Libraries to Smithsonian researchers that could serve as a model or inspiration for similar services to the broader research community in Kenya. There were invited guests from National Museums of Kenya, the Kenya Wildlife ServiceNature Kenya: The East African Natural History Society, and the National Commission for Science, Technology and Innovation (NACOSTI). In addition, Albertine worked with ARC Deputy Director Nashon Akello to publicize the program widely with the university community and faculty and students from both Kenyatta University and the Technical University of Kenya.

Smithsonian Libraries Associate Director Martin R. Kalfatovic's presentation, "Managing Scholarly Research Output: The Smithsonian Institution Experience: An Introduction to Smithsonian Research Online (SRO)" covered key components of the Smithsonian Libraries' SRO program of bibliographic data collection, data analysis for metrics and reporting, and communications to administrators, researchers, and the public. The presentation was based on previous presentations of SIL staff Alvin Hutchinson and Richard Naples and with input from Suzanne C. Pilsk. A representative of NACOSTI in attendance commented:
Information management and data analysis towards scholarly publications is a very important indicator of a nation's development and reflects the potential of a nation to harness its human resource in solving problems of mankind. It also broadens the horizons of policy thinking and in addressing many critical issues the government faces. As a policy making institution, scholarly publications will be very important in advising the government accurately. Therefore, your invitation of our institution was timely because this is one of the areas needed to be harnessed in advising the government by policy directions using real data.
As Scott Miller, Deputy Under Secretary for Collections and Interdisciplinary Support at the Smithsonian Institution, who facilitated the planning for the program, noted:
Most research organizations in Kenya, as well as agencies who regulate research, are struggling with the challenges of tracking and making available the results of research. The tools that Smithsonian Research Online have used could be readily adapted for use by some of these organizations.
Given the overlap of interests of many organizations in biodiversity research in Kenya, I also hope these presentations catalyze discussion of the possibility of a multi-organization collaboration to create a centralized data archive that has multiple portals to serve different users.
Carolyn A. Sheffield, BHL Program Manager, presented on "Inspiring Discovery Through Free Access to Biodiversity Knowledge: The Biodiversity Heritage Library (BHL)." Sheffield covered a general introduction of the BHL as well as recent accomplishments and metrics related to Kenya and Africa. BHL Africa colleagues, Asha Owono and Ben Nakitare were in attendance and provided additional support in relation to Kenyan participation in the BHL during the question and answer period. A participant from the Kenya Wildlife Service noted: "The lecture and demonstration were very encouraging and I have the feeling that if this is pursued more vigorously, it can enhance information sharing within the conservation field in this country and the world at large."

Kalfatovic, Albertine, Sheffield
Again, as Dr. Miller commented during the planning for this presentation, "This program is important for several reasons beyond helping users understand how to use the Biodiversity Heritage Library (which is important in itself). Kenya is poised to make significant additions to the BHL.  As was discussed at the Laikipia landscape workshop in February, there is a rich history of 'grey literature' in East Africa on agriculture, wildlife, public health, etc., that is not available to most people today."

The ARC was filled to capacity with sixty attendees. The Embassy social media team led by Amos Rono also presented the program as a Facebook Live broadcast as well as live streaming it to other U.S. Embassies in East Africa (see link below). Smithsonian Libraries and Biodiversity Heritage Library social media team also promoted the event.

Thanks to ARC Director George Kamau and ARC Deputy Director Nashon Akello for hosting the program in their space and Dan Travis (Public Affairs Officer), Megan Larson-Kone (Cultural Affairs Officer), Alka Bhatnagar (Information Resource Specialist), and Pushpinder Dhillon (Economic Section Chief) on the U.S. Embassy staff who worked to make this program a success.

View the Facebook Live presentation: 

Promoting the Biodiversity Heritage Library and Scholarly Communications at the Mpala Research Centre in Kenya

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Under the auspices of Scott Miller, Deputy Under Secretary for Collections and Interdisciplinary Support (DUSCIS) at the Smithsonian Institution and Vice-Chair of the Mpala Research Centre, I spent three days at the Mpala Research Centre in Laikipia County, Kenya with Carolyn A. Sheffield (BHL Program Manager) to learn more about the activities and research at Mpala and to explore partnerships around the Biodiversity Heritage Library and scholarly communications.

Library this way!
Dr. Dino Martins, Executive Director of the Mpala Research Centre, met Kalfatovic and Sheffield outside of Nanyuki just north of the equator and in the shadow of Mt. Kenya, about 240 kilometers north of Nairobi. We made a short stop at the equator marker before picking up a few supplies for the trip back to Mpala. On the ninety minute drive from Nanyuki to Mpala, Dr. Martins gave a fascinating and useful overview of the history of Mpala and the complex interactions of wildlife and human agricultural activities around livestock and farming. Increasing pressure on the environment from the subdivision of land for residential development and challenges presented by climate change on the area are a daily concern for Martins as he manages the important living laboratory that is the Mpala Research Centre.

Mt Kenya
As noted on the Mpala website:
Mpala stretches over 48,000 acres of semi-arid savanna, acacia bushland, wooded grassland, rocky escarpments and riverine habitats along the Ewaso Nyiro and Ewaso Narok rivers. The Mpala Research Centre (MRC) receives hundreds of students, educators, and scientists from around the globe each year, conducting research on everything from parasites to elephants. The unique set up of Mpala allows for researchers to use the land as a ‘living laboratory’ in which to conduct experiments and answer pressing questions on conservation and wildlife.
With Dr. Martins
In touring the grounds of the Centre, Dr. Martins also spoke of the opportunities presented by the ongoing collaborative work done by the Conservancies, such as Mpala, Kenyan local and national governmental agencies, and private landowners to balance wildlife and nature conservation, sustainable economic development, and farming/ranching activities.

"Most research organizations in Kenya (including Mpala), as well as agencies who regulate research, are struggling with the challenges of tracking and making available the results of research. The tools that Smithsonian Research Online have used could be readily adapted for use by some of these organizations" said the Smithsonian's Scott Miller.

At the equator with Dr. Martins
To help better understand the work done at Mpala and the research needs, Dr. Martins personally took us on two evening game drives throughout the Mpala grounds. The visits were nothing short of spectacular. Sightings of various wildlife were numerous (see fuller list below), including many listed as vulnerable or endangered on the IUCN Red List of Threatened Species. It was wonderful to see large groups of the endangered Grévy's zebra (Equus grevyi) with young foals. Three species of vulnerable animals, Hippopotamus (Hippopotamus amphibius), Reticulated giraffe (Giraffa camelopardalis reticulata), and Elephant (Loxodonta africana) were present in large numbers. Among the other Artiodactyla sighted, the groups of Greater Kudu (Tragelaphus strepsiceros) were spectacular. Mpala also maintains herds of domestic cattle. At the end of the game drive, we stopped by one of the cattle enclosures as Dr. Martins consulted with the Mpala herdsmen on the status of the cattle.

Greater Kudu  (Tragelaphus strepsiceros)

Elephant (Loxodonta africana)

Hippopotamus (Hippopotamus amphibius)

Grévy's zebra (Equus grevyi)
The next morning, during a visit to the research facilities, we spent time in the N.S.F. and McCormack Research Labs at Mpala, where we were shown the ongoing work of visiting and longer term researchers, including experiments being down with caterpillars. On our first full morning at the Centre, we were taken on a bird watching walk of the grounds with ornithologist Sylvester Karimi.

Research labs
On the final day of the visit, presentations on scholarly communications management and the Biodiversity Heritage Library were given to an audience of about twenty people. Included in the audience were representatives from ten institutions, in addition to Mpala Research Centre staff. Institutions represented included: Space for Giants,  Laikipia Wildlife ForumKenya Forestry Research Institute (KEFRI), Olpejeta ConservancyLewa ConservancyUniversity of BayreuthDaraja Academy,  Lekiji Primary School, Oljogi Primary School, and the Mpala Academy.

I spoke on "Managing Scholarly Research Output: The Smithsonian Institution Experience: An Introduction to Smithsonian Research Online" and BHL Program Manager Carolyn A. Sheffield presented on "Inspiring Discovery Through Free Access to Biodiversity Knowledge: The Biodiversity Heritage Library (BHL)."

Mpala library volunteer Naomi Wanjiru Chege
At the conclusion of the presentations, we met with Mpala library volunteer Naomi Wanjiru Chege and Anchal Padukone (Princeton in Africa Fellow) to discuss the library facility at Mpala and possible areas of collaboration between the Centre and Smithsonian Libraries as well as the Biodiversity Heritage Library. We also had an opportunity to visit the studio facilities of Mpala Live!:
"Mpala Live! gives you a round-the-clock look at the lives of elephants, lions, zebras, giraffes, hippos, birds, and other animals in a fascinating swath of African landscape. Our webcams let you visually enter this realm. The Hippo Pool cameras, for instance, take you to a watering hole that attracts hippos, monkeys, zebras, giraffe, scores of bird species, and the occasional crocodile."
Mpala Live!, with viewership in the millions, provides both educational and research activities with its active citizen science engagement.

With Naomi Wanjiru Chege
As our work at the Centre ended, we shared yet another wonderful meal with the guests, researchers, and Mpala staff. The lunch provided additional opportunities to learn about the work done in the Kenyan wildlife conservancies and at Mpala. The luncheon concluded, we met our transportation for the five hour ride back to Nairobi and our departing flight at the Jomo Kenyatta International Airport.





On this visit to Kenya, we were treated to some wonderful sightings of the local flora and fauna. In Mpala and the nearby areas, the following were some of the highlights of the local fauna. For lists of the flora and fauna of Mpala, please see the following Mpala website page.

PRIMATES
  • Vervet Monkey (Cercopithecus aethiops)
  • Black-and-white colobus monkey (Colobus) [sighted outside the Mpala Research Centre]
  • Olive Baboon (Papio anubis) [sighted outside the Mpala Research Centre]
CARNIVORA
  • Bat-eared Fox (Otocyon megalotis)
  • Slender Mongoose (Galerella sanguinea)
Reticulated giraffe (Giraffa camelopardalis reticulata)
ARTIODACTYLA
  • Hippopotamus (Hippopotamus amphibius)
  • Common Warthog (Phacochoerus africanus)
  • Reticulated giraffe (Giraffa camelopardalis reticulata)
  • Impala (Aepyeros melampus)
  • Guenther's Dikdik (Madoqua guentheri)
  • Steenbok (Raphicerus campestris)
  • Greater Kudu (Tragelaphus strepsiceros)
  • Bushbuck (Tragelaphus scriptus)
PROBOSCOIDEA
  • Elephant (Loxodonta africana)
Spider plant (Cleome gynandra)
PERISSODACTYLA
  • Grévy's zebra (Equus grevyi)
LAGOMORPHA
  • Scrub hare (Lepus saxatilis)
HYRACOIDEA
  • Bush Hyrax (Heterohyrax brucei)
Cow (Bos taurus/indicus)
DOMESTIC
  • Cow (Bos taurus/indicus)
  • Sheep (Ovis aries) [sighted outside the Mpala Research Centre]
  • Goat (Capra hircus) [sighted outside the Mpala Research Centre]
  • Donkey (Equus africanus) [sighted outside the Mpala Research Centre]
  • Camel (Camelus dromedaryus)
  • Domestic Dog (Canis familiaris)
  • Domestic Cat (Felis sylvestris)
AVES (Selected)
  • Vulturine Guineafowl (Acryllium vulturinum)
  • Egyptian Goose (Alopochen aegyptiacus)
  • Gabar Goshawk (Micronisus gabar)
  • Martial Eagle (Polemaetus bellicosus)
  • Red-chested Cuckoo (Cuculus solitarius)
  • Red-billed Hornbill (Tockus erythrorhynchus)
  • Rock Martin (Hirundo fuligula)
  • Common Bulbul (Pycnonotus barbatus)
  • Superb Starling (Lamprotornis superbus)
A lone Grévy's zebra (Equus grevyi)

Expanding Library Impact through Open Access Digitization

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By Grace Costantino 
Outreach and Communication Manager 
Biodiversity Heritage Library

Bandstand at the Singapore Botanic Gardens. Photo by Martin Kalfavotic.

Located in central Singapore, just minutes away from the city's main shopping district, sits the first and only tropical botanic garden listed as an UNESCO World Heritage Site. Established at its present site in 1859, the Singapore Botanic Gardens (SBG) covers 82 hectares and is home to thousands of plant species.

Since 1875, the SBG Library has supported research at the Gardens. Over the years, the Library has amassed a large collection of rare and scholarly literature and artworks that are housed in climate-controlled spaces. Access to these materials has traditionally been limited to privileged, on-site researchers. Recently, to increase the accessibility and impact of these collections, the SBG Library has embarked on an extensive preservation and digitization program.

Dr. Nura Abdul Karim, Deputy Director of Library, Training, and External Relations at Singapore Botanic Gardens.

"A thorough understanding of biodiversity in Singapore and the Southeast Asia region relies both on the study of the plants and animals in the region and also on the accumulated knowledge of researchers who have gone before us," asserts Dr. Nura Abdul Karim, Deputy Director of Library, Training, and External Relations at SBG. "SBG Library believes that digital access is an important avenue for sharing knowledge and information in this Computer Age."

To that end, SBG is participating in BHL Singapore, which is led by the National Library Board, Singapore. To date, SBG Library has digitized over 8,000 pages for BHL.

"As custodian of this wealth of biodiversity literature, SBG Library believes that these important legacy works need not only be restored but also preserved and made available through the digital access platform of the Biodiversity Heritage Library," says Abdul Karim. "BHL will allow far greater access to academics, researchers and students, and possibly even to the global public, than was ever possible before."

Tour of the Singapore Botanic Gardens Library by Dr. Nigel Taylor. Photo by Martin R. Kalfatovic.

As a participant in BHL Singapore, the SBG Library is not only digitizing its collections for BHL, but the Gardens also hosted the BHL Open Day this past March as part of the 2017 BHL Annual Meeting festivities. During the event, local researchers spoke about the impact that open access to biodiversity literature through BHL has on their research.

"We believe that by sharing important collections in BHL and allowing free digital access to such materials, we will greatly assist researchers in furthering their own research on biodiversity in the Southeast Asian region," affirms Abdul Karim. "Information inequality between developing and developed world researchers can be narrowed with the availability of open access digital repositories."

Content digitized by SBG Library to date includes the Gardens'Bulletin as well as registers of the plants and seeds acquired by the Gardens. In the future, the Library plans to contribute unique field notes from the Gardens' collections, including those by orchid botanist Cedric Errol Carr, which are currently being transcribed as part of The Citizen Archivist Project at the National Archives of Singapore.

Page from Plants and seeds inward register, 2 January 1959-1972. Digitized by Singapore Botanic Gardens, National Parks Board Singapore. http://www.biodiversitylibrary.org/page/50744514.

Dr. Abdul Karim is confident that this digitization will have a significant impact on local and global research.

"Very few libraries in the world have resources that would enable all of the researchers that they serve to be able to conduct their studies unencumbered by lack of vital literature," says Abdul Karim. "Access to a wider array of literature through BHL can have a profound and positive impact on biodiversity, as research can be more wide ranging, accurate and speedy, and the data vital in many fields of science and conservation can be published in a much shorter timeframe."

Indeed, user testimonials illustrate how BHL increases the efficiency and effectiveness of research around the world. With the help of partners such as SBG Library, BHL's growing collections will continue to empower research on a global scale. Dr. Abdul Karim and her Singapore colleagues share this conviction.

"SBG Library believes that BHL, with its rich digital repository of biological information, will continue to play an important role in botanical research and has indirectly also become a platform for long-term preservation of historical and legacy biodiversity literatures."

My Experience as a BHL Product Development and Marketing Intern

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By Carolina Murcia
BHL Product Development and Marketing Intern

Carolina Murcia. BHL Product Development and Marketing Intern.

I am a designer. I am an artist. I am an illustrator. I am an amateur photographer, a daughter, a traveler, an adventurist, a niece, a walker, a cyclist, a friend, an intern, a professional, a foreigner, a Latina, a Colombian, a woman, a strong woman, a bilingual. I am a person that has grow and re-recognized myself since I started my journey with the Biodiversity Heritage Library. I know the value of real things and how lucky I am for the people and opportunities that life has placed my way.

Over the past eight months, I served as the BHL Product Development and Marketing Intern for BHL at the Smithsonian Libraries, designing products for the BHL Store and creating promotional graphics for those products. As a designer, I enjoyed creating products, managing scientific illustrations, taking pictures inside the wonderful National Museum of Natural History, and creating and imagining different graphical styles to advertise the products in each collection.

Botanic Wonderland products created for the BHL Store. Products and marketing materials designed by Carolina Murcia.

For me, as a designer, the most magical part of my experience was exploring the amazing illustrations in the BHL collection. I was awed by the skills of these illustrators, and I saw that many of these early scientists were real artists. The lines of the drawings, the colors, the perspective - how the illustrators translated the movement of nature to a flat page that persists over the years - is just wonderful.

I am grateful that my internship allowed me to experience every aspect of product development and marketing. I not only searched for and chose the images for a new collection in the store, but also edited each image to work within a given product, creating a complete family of products, and finally designed the marketing advertising graphics. I was involved from the beginning until the end of each collection, and for all of the products, I have a special affection.

My favorite product collection, however, allowed me to stretch my creative skills. After working with all of these amazing books and their illustrations, I had the opportunity to create my own graphic line inspired by the BHL brand. For this collection, I started from scratch. I didn’t have any base illustration or book to start with. I designed all of the graphics from my own imagination. I wanted to find a way to enhance the logo and produce amazing products that didn't just look like simple souvenirs but that can compete with big brands.  I put the real and complete “me” in the graphic line, now I can say…. I am proud of the results. My hope is that BHL staff will use the products and be proud of having a t-shirt/Mug/Journal/etc. from BHL, knowing that it has design and style. I hope people really look twice every time they are near a BHL New Design Products.

BHL New Design products. Products and promotional graphics designed by Carolina Murcia.

So, after 8 months of learning, creating and designing, I decided that I liked everything about my experience. My favorite part of the internship was choosing and playing with the illustrations. I was like a kid with a new toy. I could spend hours just playing with the graphics, creating patterns, changing colors, etc. Working through the complete process of product development was the best way to develop my skills as a professional designer.

I want to say thanks to BHL, but especially to my mentor and supervisor, Grace Costantino, for being patient, for giving me the chance to come to the Smithsonian Libraries, for trusting in my abilities, and for helping me develop my skills. It has been 8 happy months where I got to know people and places that I love...and I hope that I will see them again.

Report from the Digital Data in Biodiversity Research Conference, University of Michigan

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University of Michigan
The Digital Data in Biodiversity Research Conference was sponsored by iDigBio, the University of Michigan Herbarium, the University of Michigan Museum of Paleontology, and the University of Michigan Museum of Zoology. The conference was attended by about 185 people from a variety of institutions. I attended to participate in the GBIF North American Nodes Workshop and was joined by Alicia Esquivel (BHL NDSR Resident based at the Chicago Botanic Garden).

After a welcome from Dean Andrew D. Martin of the College of Literature, Science, and the Arts, the opening series of plenary talks began with Stephen Smith (University of Michigan) speaking on "The Utility of Large-scale Phylogenetic Analyses for Understanding the Evolution of Biodiversity." The detailed talk covered the promise of a comprehensive view of the tree of life, whether for a particular clade or the entire tree of life which has been a major motivation of the systematics community for decades. Smith described new efforts and new ways for combining the resources from the Open Tree of Life with other phylogenetic analyses to construct a dated and comprehensive tree and discussed construction of a comprehensive tree for seed plants containing 80,037 taxa from GenBank and 356,807 total taxa.

Maureen Kearney
Maureen Kearney, Associate Director for Science, National Museum of Natural History (Smithsonian Institution) spoke next. Kearney's talk, "Expanding the Power of Natural History Knowledge: Frontiers in Research and Collections at the Smithsonian’s National Museum of Natural History," was an inspiring overview of the role of natural history museums in this era of rapid global change to mobilize collections data and natural history knowledge for science and society.

Kearney spoke of how natural history scientists help us comprehend the fundamental nature of the planet, of organisms (including humans), and of evolutionary and ecological interactions throughout the history of life on Earth. Enormous potential exists for natural history museums in the 21st century if they highlight their unique niche as irreplaceable research and data centers for the study of global change. Kearney also noted that this can only be realized if museums build large-scale pipelines and open-source, dynamic platforms to digitize, structure, link, and share our natural history data and knowledge. She spoke of key partners inside the National Museum of Natural History (such as the Global Genomics Initiative and the Encyclopedia of Life) and other partners at the Smithsonian, including the Biodiversity Heritage Library and the Smithsonian's Digitization Program Office and its 3D imaging team.

Donald Hobern
Donald Hobern, GBIF Executive Secretary, spoke on "Preserving Evidence of Biodiversity Patterns: GBIF and Persistent Biodiversity Data Management." Hobern gave an overview of GBIF as well as the goals of the GBIF implementation plan, which include simplifying and supporting data publishing and assisting with delivery of the most detailed version possible for each data source.

Other plenary talks included:
  • "Linking Heterogeneous Data in Biodiversity Research" by Pam Soltis, Florida Museum of Natural History, University of Florida
  • "Using 'Digital Specimens' to explore the behavioral phenotype" by Mike Webster, Cornell Laboratory of Ornithology
Dan Fisher
DAY 1: CONCURRENT SESSIONS
Full abstracts and details of the Concurrent Sessions are online. Sessions attended were:
  • 3D Surface Models in Paleontology and Archaeology by Dan Fisher, University of Michigan Museum of Paleontology. Used the Buesching mastodon (now at University of Michigan) as a case study for the talk. Walked through the excavation and the 3D imaging process. Digital data on the external form of specimens are central to many paleontological and archaeological analyses. Digital models minimize handling of fragile and/or heavy specimens, facilitate access and collaboration, allow complex measurements, enhance visualization of surface topography, and simplify inspection of multi-object assemblies. 
  • Paleobiology Database: A Community Based Data Service for Research, Education, and Museums by Mark Uhen, George Mason University
  • MorphoSource: A Virtual Museum and Digital Repository for 3D Specimen Data by Doug Boyer, Duke University
  • ePANDDA: enhancing Paleontological and Neontological Data Discovery API by Susan Butts, Yale University; Seth Kaufman, Whirligig Inc.
  • The Importance and Challenges of Database Integration: MorphoBank, MorphoSource, and the Paleobiology Database by Julie Winchester, Duke University

Macklin, Hanner, Bruneau
AFTERNOON WORKSHOP
In the afternoon, the meeting offered focused workshops. The Biodiversity Heritage Library was invited to participate in the Digital Data and the North American Nodes of the Global Biodiversity Information Facility session led by Bob Hanner, Stinger Guala, and James Macklin. A goal of the workshop was to discuss the current status of the GBIF North American Nodes, current activities and collaborations.

Attended by about 50 participants, the presentations at the workshop included:
  • National and Regional Coordination Roles within GBIF (Donald Hobern)
  • Biodiversity Information Serving Our Nation (BISON): Connections and Cooperation (Stinger Guala)
  • The Canadian Biodiversity Information Facility (CBIF) (James Macklin)
  • Canadensys: revealing the biodiversity of Canada (Anne Bruneau)
  • Overview of the Biodiversity Heritage Library Recent Activities (Martin Kalfatovic)
  • The Catalogue of Life: Infrastructure for Science (Tom Orrell)
  • Global Genome Biodiversity Network – Infrastructure for Genomic Research (Jon Coddington)
  • iDigBio, National Coordinating Center for NSF's ADBC Program (Larry Page)
The BHL talk, "Overview of the Biodiversity Heritage Library: Recent Activities" covered:
As the world’s largest open access digital library for biodiversity literature, the Biodiversity Heritage Library (BHL) is an unparalleled resource that has forever changed the way researchers around the globe understand, describe, and conserve life on Earth. BHL has become not only a model for digital libraries but also a fundamental resource for taxonomic literature aggregation, discovery, and presentation by engaging the taxonomic community and responding to user needs. To achieve this, BHL relies on many standards and tools, such as Digital Object Identifiers (DOIs), Application Programming Interfaces (APIs), and Global Names Architecture (GNA). These standards and tools help ensure that data in and about the literature matches the needs and expectations of the scientific community and is readily available for widespread reuse. To meet the evolving needs and expectations of researchers, we must continually innovate and adapt to the changing technological landscape.  BHL is in the process of organizing widespread user needs analysis and an environmental scan of information resources to define requirements for a next generation digital library. 
The presentations were followed by a panel discussion and a conversation with the audience.

EVENING RECEPTION AND TOUR OF THE RESEARCH MUSEUMS CENTER
After the day's meetings, attendees were bused to the Research Museums Center, located about 7.5 kilometers from the center of the University of Michigan campus. Participants were given the opportunity of guided tours of the University of Michigan Herbarium, collections areas of the Museum of Paleontology, and the wet and dry collections of the Museum of Zoology.

 

 


 

 



Adam Summers
DAY 2: PLENARY TALKS
The second day again opened with plenary talks which included:
  • Big Data, Museum Specimens, Access and Archiving - Lessons from #scanAllFish by Adam Summers, University of Washington. Amazing high energy talk about Summers' project #scanAllFish, over 1,991 species, 3,094 specimens from 109 collections. Expects to store over half a petabyte of data for 30,000 vertebrates. Storing and backing these data up is an issue. It is also interesting to consider what collections plan to do when these data are returned to them with the specimens. 
  • Video Data and Motion Analysis in Comparative Biomechanics Research by Beth Brainerd, Brown University. "Film or video recordings have long been important primary data for research in comparative biomechanics. Innovations have included the use of two or more cameras to capture 3D motion, and the use of two X-ray video cameras (fluoroscopes) to capture 3D motion of bones in vivo. Over the past decade we have developed X-ray Reconstruction of Moving Morphology (XROMM), which combines  dual-fluoroscopy with bone models from CT scans to produce accurate animations of 3D bones moving in 3D space."
  • The PREDICTS Project: Projecting Responses of Ecological Diversity In Changing Terrestrial Systems by Adriana De Palma, Natural History Museum, London. "PREDICTS is a collaborative project that aims to produce global models of how local biodiversity responds to land use and related human impacts, in order to make projections under possible future scenarios."
  • Field Collections to Digital Data: A Workflow for Fossils and the Use of Digital Data for Reconstructing Ancient Forests by Dori Contreras, University of California Museum of Paleontology. "The integration of curation and digitization with project-focused data collection is a key component to performing time-efficient studies from new fossil collections. Standard workflows for processing fossil specimens starting from initial field collection and continuing through digital analysis/measurement are not widely established. Here I present my workflow for reconstruction of a diverse Late Cretaceous flora from plant macrofossils preserved in an extensive recrystallized volcanic ashfall deposit."
  • Natural History Data Pipelines: The Good, the Bad, and the Ugly by Andy Bentley, University of Kansas Biodiversity Institute. "Collections, aggregators, data re-packagers, publishers, researchers, and external user groups form a complex web of data connections and pipelines that form the natural history knowledge base essential for collections use by an ever increasing and diverse external user community.  We have made great strides in developing the individual parts of this knowledge base and we are now well poised to integrate these capabilities to address big picture questions.  Although we need to continue work on the individual pieces, the focus now needs to be on integration of these disparate sources of data that create the pipeline."
Esquivel
DAY 2: CONCURRENT SESSIONS
Sessions attended included:
  • Using Statistical Analysis to Calculate the Size of Biodiversity Literature by Alicia Esquivel, Chicago Botanic Garden
  • Illustrating Value Added in Databasing Historical Collections: Entered, Proofed, and Done (or Not!) by Tony Reznicek, University of Michigan Herbarium
  • The Encyclopedia of Life v3: constructing a linked data model by Jennifer Hammock, National Museum of Natural History, Encyclopedia of Life, Smithsonian Institution
  • Encyclopedia of Life Version 3: New Tools for the Exploration of Biodiversity Knowledge by Katja Schulz, National Museum of Natural History, Encyclopedia of Life, Smithsonian Institution
  • How do People see Biodiversity? Using a Digital Identification Key in a Citizen Science Programby Mathilde Delaunay, Muséum national d'Histoire naturelle, Paris, France
  • Taxonomic Data Quality in GBIF: A Case Study of Aquatic Macroinvertebrate Groups by Joan Damerow, Field Museum of Natural History
  • Hole-y Plant Databases! Understanding and Preventing Biases in Botanical Big Data by Katelin D. Pearson, Florida State University
Alicia Esquivel's talk was an excellent overview of the BHL NDSR Resident program and the important work being done by the group as BHL looks forward to BHL Version 2. Esquivel's work focuses on looking for gaps in the BHL collections and other collections analysis. In addition to her talk, she also presented a poster (co-authored by Constance Rinaldo, BHL Chair / Museum of Comparative Zoology, Harvard University).

CAPSTONE SESSION
  • Prospects for the Use of Digitized Specimens in Studies of Plant Diversity and Evolutionby Michael Donoghue, Yale University
  • A Vision for a National Cyberinfrastructure for Biodiversity Research and what NSF can do Enable it by Peter McCartney, National Science Foundation
OTHER RESOURCES
Research Museums Center, University of Michigan

The Southern Cultivator

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By Patrick Randall
Community Manager
Expanding Access to Biodiversity Literature

The Expanding Access to Biodiversity Literature (EABL) collection has grown rapidly over the last year, with the addition of born digital material and in-copyright titles scanned by various BHL member libraries. It wasn't until recently, however, that the collection included titles contributed directly by non-BHL members. This process—a significant departure from usual BHL workflows—is part of EABL's effort to digitize valuable content from organizations outside the consortium. Contributors ship their material to the closest Internet Archive (IA) scanning center, where it is scanned and added to the BHL and EABL IA collections. From there, the metadata is ingested into BHL by the usual process. EABL then reimburses the scanning cost.

The first organization to digitize in this way through EABL was the Cherokee Garden Library, Kenan Research Center at the Atlanta History Center. They contributed seed catalogs published by H.G. Hastings & Co., a major commercial agricultural company in Atlanta, Georgia, in the early 20th century.

Hastings' Seeds, No.55 (1918). http://www.biodiversitylibrary.org/page/53015794. Digitized by Cherokee Garden Library, Kenan Research Center at the Atlanta History Center.

The Cherokee Garden Library also contributed a number of volumes (v.1-4, 1843-1846; v.13-15, 1855-1857; v.17, 1859) of The Southern Cultivator, another Atlanta-based publication that historian Michael T. Bernath called "the Confederacy's oldest, strongest, and intellectually most impressive agricultural journal." The journal is important not only as a source of information about the agriculture industry of the antebellum South, but also for its stark depiction of American slavery and the unconscionable role it played in the rise of that industry. It was published from 1843 to 1872.

Southern Cultivator. v. 17 (1859). http://www.biodiversitylibrary.org/page/53013665. Digitized by Cherokee Garden Library, Kenan Research Center at the Atlanta History Center.

The editors of The Southern Cultivator minced no words in promoting the practice of slavery; in fact, they saw it as a crucial component in their plan to elevate southern agriculture. In v.1 (1843), they printed an address given by John Belton O'Neall to the Agricultural Society of South Carolina in December of the previous year. In it, Judge O'Neall states that there is one obstacle to realizing the full industrial potential of the state — the "carelessness of her operatives," i.e., slaves. He continues, "Still, our slaves are capable of more, much more, than we have hitherto had credit for. It is only necessary that they should be taught habits of regularity, economy and thrift, to make them the most effective laborers in the world. This is what we are attempting." (p.109).

Difficult as it is to read these words—and they are hardly the most racist to appear in the journal's pages—they provide an unvarnished glimpse into a period of American history in which slavery was a cornerstone of agriculture throughout much of the country. Indeed, The Southern Cultivator shows that it was not southerners alone who believed slavery was vital to the economy. In v.17 (1859), as the tensions that would lead to civil war were quickly rising, the editors reprinted an editorial from the Providence [Rhode Island] Post arguing that the North would suffer equally, if not more, if the South were to secede from the Union or if slavery were abolished. They preface the editorial by saying, completely without irony, that they "seldom dabble in anything that even resembles the 'dirty water of politics'." The editorial itself is frank in putting material concerns over principle: 

Slavery may be a great outrage against humanity. We look upon it in this light, and have no defence to offer for it. But we remind Northern men, not only that the North clung to while it promised to be profitable...but that Northern merchants and Northern mechanics and Northern manufacturers are dependent on it to-day for their stately ships, their immense store-houses, their splendid dwellings, their paying railroads and their reputation for thrift. (p.107)

Sample of the index to v.17 (1859),
showing the topical breadth of the journal. http://www.biodiversitylibrary.org/page/53013673. Digitized by Cherokee Garden Library, Kenan Research Center at the Atlanta History Center.

As the United States continues to grapple with the legacy of the Confederacy, slavery, and the aftermath of the American Civil War, the digitization of these volumes is particularly timely. We are grateful to the Cherokee Garden Library, Kenan Research Center at the Atlanta History Center for contributing them through EABL, and we hope that they will be useful to researchers across many disciplines. 

To learn more about the Cherokee Garden Library and its work with EABL, see this post from earlier this year.


Reference


Michael T. Bernath, Confederate Minds: The Struggle for Intellectual Independence in the Civil War South, Chapel Hill, North Carolina: University of North Carolina Press, 2010, p. 86

The First European Language Monographic Series on the Zoology of Japan

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By: 
Robert Scott Young (Special Collections Librarian, Ernst Mayr Library)
and
Constance Rinaldo (Librarian of the Ernst Mayr Library & MCZ Archives)
Museum of Comparative Zoology, Harvard University

Siebold, Philipp Franz von. Fauna japonica. v.[2] Pisces. ([1842]-1850). Digitized by Harvard University, Museum of Comparative Zoology, Ernst Mayr Library.

Fauna japonica, sive, Descriptio animalium, quae in itinere per Japoniam ... (Leiden, 1833-1850) is a set of five volumes based on natural-history collections made in Japan by German physician and botanist Philipp Franz von Siebold and his assistant and successor Heinrich Burger, with drawings by the Japanese artist Kawahara Keiga. It is the first monographic series written in a European language (French) on the zoology of Japan, and it introduced Japanese fauna to the West on a large scale. The volumes of Fauna Japonica, contributed by the Ernst Mayr Library of the Museum of Comparative Zoology, Harvard University, can be viewed on BHL.

Siebold, Philipp Franz von. Fauna japonica. v. [3]. Reptilia. (1838). Digitized by Harvard University, Museum of Comparative Zoology, Ernst Mayr Library. http://s.si.edu/2sQxneR.

Von Siebold (1796-1866) arrived in Japan in 1823 as resident doctor of the Dutch trading post on Deshima island, Nagasaki. He was eager to learn about natural history in far-flung countries at a time when natural history knowledge was progressing in Europe. In addition to medical work, Von Siebold, who had a strong interest in zoology, and Burger along with their Japanese colleagues collected and purchased natural history specimens and ethnological objects during excursions in the Nagasaki area. Von Siebold was also allowed to travel beyond Nagasaki with Dutch embassy officials. Patients whom von Siebold and Burger treated and residents whom they met assisted with the massive collecting project. Von Siebold established a private school where he taught medicine and natural history and the students became collectors as well.

Von Siebold was was given several detailed maps of Japan for his explorations by the court astronomer, Takahashi Kageyasu. When the Japanese government discovered the maps, they accused von Siebold of spying and treason, expelling him from the country. His then 2 year old daughter, Kusumoto Ine, went on to become the first licensed female Japanese physician of Western medicine.

Siebold, Philipp Franz von. Fauna japonica. v. [4.] Aves. ([1844]-1850). Digitized by Harvard University, Museum of Comparative Zoology, Ernst Mayr Library. http://s.si.edu/2rCBqb4.

After enduring these legal difficulties, von Siebold was able to return to the Netherlands in 1829. His vast natural-history collections preceded him to Batavia onboard ships while he was detained. The Dutch contingent that received the collections was actually a bit relieved that von Siebold was not present when the specimens arrived, as they feared that he might disperse them to institutions beyond the Netherlands.

Safely home, von Siebold commissioned Leiden Museum director C. J. Temminck to write Fauna japonica’s mammal volume. Temminck and his museum colleague Hermann Schlegel compiled the bird, reptile, and fish volumes; and Leiden Museum invertebrates curator Wilhelm de Haan wrote the Crustacea volume. The series was originally published in separate fascicles, edited by von Siebold. An unfinished, unpublished echinoderm manuscript for Fauna japonica by J. A. Herklots is now in the archives of the Leiden Museum.

Siebold, Philipp Franz von. Fauna japonica. v. [5]. Mammalia. ([1842-1845]). Digitized by Harvard University, Museum of Comparative Zoology, Ernst Mayr Library. http://s.si.edu/2rCnPR3.

Initially, von Siebold published Fauna japonica partly with his own funds and partly with a grant from the Dutch government. By 1833, the Amsterdam publisher J. Muller became partners with von Siebold in the venture. Until 1840, the plates were lithographed at von Siebold’s own lithographic plant, as indicated by “Lith. d. Nippon,” and later were done at other firms until the Leiden printer A. Arnz took over publication of Fauna japonica’s text and plates entirely.

Because the original volumes of Fauna japonica were issued in a limited (unknown) number, they became so difficult and expensive to obtain that a facsimile edition in four volumes was published in Japan in 1934 in an edition of 350 copies -- now that edition has become very difficult to obtain as well. The University of Kyoto has also digitized the volumes of Fauna Japonica.

Siebold, Philipp Franz von. Fauna japonica. v. [1]. Introductions and Crustacea. (1833-1850). Digitized by Harvard University, Museum of Comparative Zoology, Ernst Mayr Library. http://s.si.edu/2rRDwYL.

References:

L. B. Holthuis and T. Sakai. Ph. F. von Siebold and Fauna japonica: a history of early Japanese zoology. Tokyo: Academic Press of Japan, 1970.

L. B. Holthus. “On the dates of publication of W. De Haan’s volume on the Crustacea of P. F. von Siebold’s Fauna japonica,” The Journal of the Society for the Bibliography of Natural History, vol. 3, pt. 1, 1953.

Ueno, Masuzo. "The Western Influence on Natural History in Japan." Monumenta Nipponica 19, no. 3/4 (1964): 315-39. doi:10.2307/2383175.

Celebrating Sir Joseph Dalton Hooker at 200

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By Cam Sharp Jones and Virginia Mills 
Project Officers
The Joseph Hooker Correspondence Project
The Royal Botanic Gardens, Kew

Sir Joseph Dalton Hooker

On the 30th June 1817, Joseph Dalton Hooker was born in Halesworth, Suffolk. The second child of William Jackson Hooker, Joseph would, during the course of his life, become a ‘botanical trailblazer’ - traveling across the globe to collect plants and theorizing on plant species diversity and geography. Joseph Hooker would also become Kew Gardens’ second and most illustrious Director, overseeing the establishment of the first dedicated botanical Laboratory at Kew, the Marianne North Gallery and the expansion of the Gardens' herbarium and economic botany collections.

To celebrate the bicentenary of his birth this year, BHL is joining the Royal Botanic Gardens, Kew to highlight Hooker's works and contributions to science. Follow #JDHooker2017 on social media this week (26-30 June) to learn more about J.D. Hooker and explore his publications and archival materials. You can browse his publications in the BHL book collection and see related artworks from those publications in our Flickr collection. Learn more about the BHL content here.

A special aspect of the campaign is Hooker's archival material, which is being made available online thanks to Kew Gardens. Hooker was a prolific correspondent – writing to family, friends and colleagues up until his death in 1911. We are fortunate at Kew to hold an extensive archival collection reflecting both his personal papers – such as his letters to his family during his travels in India – and those created during his tenure as Assistant Director and then Director of Kew.


The Joseph Hooker Correspondence Project is currently working on digitizing and transcribing a large selection of Joseph Hooker’s correspondence, and we are delighted to announce that over 1,000 of his letters are now available to view online. This portal allows visitors to search the letters and, where available, read the summaries and transcripts of the letters. We also plan to release further letters and data in the coming months – so watch this space.

Joseph Dalton Hooker's correspondence online.

Highlights of the current online collection are the letters written by Hooker to Charles Darwin, a long-time friend and confidant, as well as those to his family during his adventures in Antarctica and India. These letters provide wonderful insights into the hardships of botanical collecting and the trials of travel during the first half of the nineteenth century.

2017 is an important year for Kew as it marks the 200th Anniversary of Joseph Hooker's birth. Not only is the correspondence project continuing to scan, transcribe and make publicly available the previously unpublished letters written by Joseph Hooker, but we are also working with colleagues from across the gardens and beyond with our partners such as BHL to further raise awareness of Hooker and his important work.


Kew will be hosting a conference celebrating the ongoing impact Joseph Hooker has had on modern botanical science. The ‘Joseph Dalton Hooker Bicentenary Meeting: The Making of Modern Botany’ will be held on the 30th June at the Royal Botanic Gardens, Kew and will bring together experts on subjects such as botanical illustration, Antarctic flora and botanical classification.

In addition to this conference, currently on display at the Shirley Sherwood gallery is the exhibition ‘Joseph Hooker: Putting plants in their place’, which brings together archival, three dimensional and illustrative material from the Kew collections to explore Joseph Hooker's life and work. The exhibition will be open until the 17th September 2017 and various tours and talks are also being held.

Selection of material on display on the Wolfson Reading Room at the Royal Botanic Gardens, Kew.

The Library, Art & Archives department has also prepared a display in the Wolfson Reading Room in the Herbarium, Library, Art & Archives building, which has just opened and is free to view. Drop in Monday-Friday 10am-4pm to see more material from our Historic Joseph Hooker collections, including material relating to his (entirely scientific!) interest in opium.

One of a series of illustrations depicting the cultivation and manufacture of opium. Collected by Joseph Hooker during his visit to the Patna opium manufactory in India in 1848.

In the gardens, the Kew volunteer guides will be providing walking tours, allowing visitors to find out how instrumental Joseph Hooker was in shaping botany and the landscape at Kew. On the weekend of the 1st and 2nd of July, the gardens will host a Joseph Hooker Bicentenary celebration with family activities, explorer’s camp and talks. The Shirley Sherwood Gallery will also be hosting a ‘Kew After Hours’ event on the evening of the 29th June. Further details of these events and others related to Joseph Hooker can be found on the main Kew website.

Further afield, the Botanic Survey of India has been hosting an exhibition on Joseph Hooker's legacy in Indian botany. The exhibit is curated jointly with Kew staff and will shortly go on tour to other locations in India.

Visit the BHL website to learn more about the #JDHooker2017 campaign, and follow the hashtag all this week for more great highlights.

Related Links

Joseph Hooker Correspondence Project
View the Joseph Hooker letters online
Joseph Dalton Hooker Bicentenary Meeting: The Making of Modern Botany
Joseph Hooker: Putting plants in their place 
Walking tours around the gardens

A Pot of Basil in Every Household

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By: Julia Blakely 
Special Collections Cataloger 
Smithsonian Libraries

In Johann Prüss’ late 15th-century herbal, Ortus Sanitatis (Garden of Health), a bushy basil plant is portrayed growing in a decorative container. The book, a popular pharmacopoeia of various remedies drawn from ancient and medieval authors, was intended to be practical. The woodcuts are somewhat stylized and simple, meant to be easily identifiable to readers such as a doctor, apothecary, spice merchant, monk, or household member.

This was a manual for ready reference at a time when literacy was not common and earlier written descriptions alone were found to be inadequate. For instance, the all-important roots of the peony, used for infantile epileptic seizure, jaundice, stomach-aches, and kidney and bladder problems, are emphasized rather than its beautiful, fragrant blossoms.

At the time, basil was applied to a number of ailments, including convulsion, deafness, diarrhea and constipation, gout, impotency, colic, and nausea. So is it significant that basil was illustrated in a pot? Medieval and Renaissance art is full of plant symbolism. Or is this portrayal simply a charmingly unexpected domestic detail?     

Ortus Sanitatis. 1497. Digitized by Smithsonian Libraries. http://www.biodiversitylibrary.org/page/40535862.

Medieval herbals ascribed healing or poisonous ‘virtues,’ the natural properties of plants. Basil is one plant of the garden full of associations, both good and bad, sometimes contradictory. And a pot of basil has a long and colorful history.

Sweet basil (Ocimum basilicum) is an herb of the mint family Lamiaceae. It is native to parts of Asia and Africa. The name may be derived from the Greek βασιλικόν φυτόν (basilikón phutón)—royal or kingly plant. While many culinary authors and cooks consider basil the “king of herbs” for its versatility and dominance in the kitchen (particularly in Italian, Thai, Vietnamese and Laotian cuisines), it long has had royal and religious associations. Ocimum sanctum(holy basil or tulasi) is sacred in the Hindu religion, though not used much in Indian dishes. In Christianity, the herb came to be associated with the Feast of the Cross, celebrating the finding by St. Helena, mother of Emperor Constantine, of the True Cross in a patch of basil.

Ancient Greeks believed basil must be sowed with words of abuse in order to thrive. In both Eastern and Western societies the herb has been associated with death. In ancient Egypt it was applied in embalming rituals. It is also an herb much connected with love and fertility rites, and has been seen as a source of erotic powers. Or, conversely, a sprig of basil would whither in the hands of the impure.

In late Medieval and Renaissance Italy, basil in a pot was a sexy thing: on a windowsill alerts a lover that the lady of the house is available to be entertained. Or, in some accounts, such as in the early 15th-century risqué tales of Sienese Gentile Sermini, its sudden removal was the signal it was safe to come on in. Apparently in some parts of present-day Southern Italy, a family notes the presence of an eligible, virginal daughter by a basil pot in the window.  

Scorpions. Woodcut from Conrad Gessner, Historia animalium. Liber 2, 1586 (BHL link here)
Plants and a Scorpion, in "Herbal" Manuscript folio 3v (Lombardy, Italy, around 1440). British Library Sloane 4016. This illustration indicates that a sting from a scorpion may be soothed by plants.
The Latin basiliskmeans dragon, mythical deadly reptile or serpent, sprouting legends of basil with scorpions. The arachnid with the venomous stinger was said to be bred out of mishandling the cultivated species of Ocimum. Scorpions were believed to favor hiding under a pot of basil, or that a spring of basil under a pot would turn into a scorpion. The Smithsonian's Floyd W. Shockley, Collections Manager (and scorpion expert) in the Department of Entomology of the National Museum of Natural History, points out that the cool dark underside of the pot is a natural place for scorpions to rest, accounting for their presence and not a particular attraction to the basil.  

In the pharmacopoeia on herbal medicine from the surviving writings of the ancient Greek physician and botanist Dioscorides, De Materia Medica, basil is prescribed for application to bites of the sea dragon or stings of the scorpion. Dr. Shockley notes there is some evidence that basil is effective in soothing scorpion stings and that the essential oil in the plant is anti-inflammatory and has pain-relieving enzymes. The plant would work to soothe the bites and stings of many arthropods, but ancient medicinal practitioners really focused on the scorpion relief aspect. Dioscorides observed that Africans would ingest the herb as a preventive measure against the pain of a sting. John Gerard in his famous 16th-century herbal repeated this belief but reported that, as did the 2nd-century physician Galen, basil should not be eaten.

Gerard in the Herball, or Generall Historie of Plantes of 1597, declared “The smell of Basil is good for the heart … it taketh away sorrowfulnesse which commeth of melancholy and maketh a man merry and glad.” Nicholas Culpeper in the 17th century wrote: "And away to Dr. Reason went I, who told me it was an herb of Mars, and under the scorpion, and, perhaps therefore called basilican, and it is no marvel if it carry a kind of virulent quality with it.” And, noting the differing portrayals of the plant: “This is the herb which all authors are together by the ears about and rail at one another (like lawyers).”

Illustration of one type of basil in the Smithsonian Libraries' 1565 edition of Mattioli (BHL scan here)
Much of ancient plant folklore was dismissed by Pier Andrea Mattioli (1501-1577) in his commentaries on Dioscorides, Di Pedacio Dioscoride Anazarbeo Libri cinque Della historia, et materia medicinale. The work first appeared in 1544, with illustrations in the 1554 edition, and became the most influential Italian herbal of the 16th century.

A medical doctor and botanist, born in Siena, the perennially grumpy Mattioli provides the delightful contemporary observation that basil was found to be growing in every Italian household, often in a pot placed by a window or in the garden. However, the finely cut illustrations in his herbal are without any whimsy such as a container. Likewise, Leonhart Fuchs’ splendid De Historia Stirpium (1542) notes this domestic element and illustrates different types of basil, including the roots, leaves, stems, and flowers. These publications are products of the Renaissance, knowledge drawn from direct observation and not legend, although much of the texts still rely on Dioscorides.

Fuchs: “Women everywhere raise Ocimun in clay pots on windowsills of their homes, also in gardens.” Smithsonian Libraries' copy scanned by BHL (link here)
Fuchs wrote that ozimumis Greek for fragrant. Basil has highly aromatic leaves and placed in a pot would serve to sweeten the air. Royal apothecary and botanist John Parkinson in Paradisi is Sole Paradisus Terrestris(1629) wrote that basil was sometimes used in nosegays and made “sweet or washing waters.” (Boston Public Library copy). In the home, the herb acted to keep flies out. Basil is, of course, sensitive to cold temperatures and planted (in Northern Europe) in a container would allow for easy moving to a warm shelter.

There are surviving examples of actual 15th-century basil pots, known as alfabeguer (derived from the Arabic word for sweet basil). These decorative containers were imported from Valencia, supplying a demand for this luxury item throughout Europe. In the Rothschild collection at Waddesdon Manor is a beautiful one, decorated in lustre and blue, dating from 1440 to 1470.  

The Rothschild Alfabeguer (this and other illustrations of basil pots here).
Detail of Antonello da Messina's "St. Jerome in his Study," of alfabeguers (and kitten) approximately 1475 (National Gallery, London)
There is an earlier recording of basil pots used as decoration or furnishing in a home, and readers of Prüss’ herbals may have picked up on the allusion. In Giovanni Boccaccio’s TheDecameron (Day IV, Novella 5) of approximately 1353, is the story of Lisabetta and Lorenzo. The lady’s three brothers murdered the lowly born Lorenzo to thwart the forbidden love between the servant and their sister. They buried the corpse in a location that came to her in a dream. Lisabetta dug up the grave, decapitated the head, and, returning home:

There she shut herself up in her room with the head, and kissed it a thousand times in every part, and wept long and bitterly over it, till she had bathed it in her tears. She then wrapped it in a piece of fine cloth, and set it in a large and beautiful pot of the sort in which marjoram or basil is planted, and covered it with earth, and therein planted some roots of the goodliest basil of Salerno, and drenched them only with her tears, or water perfumed with roses or orange-blossoms. And ‘twas her wont ever to sit beside this pot, and, all her soul one yearning, to pore upon it, as that which enshrined her Lorenzo, and when long time she had so done, she would bend over it, and weep a great while, until the basil was quite bathed in her tears.”

The basil thrived with this fertilization and watering, but the distraught Lisabetta did not: the evil brothers discovered poor Lorenzo’s head in the flowerpot and stole it away. She died from further grief.  
A more typical illustration of basil from an earlier period, showing the plant truncated. The Smithsonian Libraries' Gart der Gesundheit [Ulm?: Konrad Dinckmut?, 1487?], often attributed to Johannes von Cuba. The Missouri Botanical Garden's copy has been scanned by BHL (link here).
A version of Peter Schöffer’s Ortus ([H]ortus) Sanitatis(1485) was published in 1491 by Jacob Meydenbach of Mainz. Some of the more than a thousand small illustrations were copied rather crudely from Der Gart der Gesundheit (also of 1485), which itself was based on the Latin Herbariusof 1484 (Missouri Botanical Garden copy in BHL). Although there is an occasional genre scene (such as laborers) and landscape setting sprinkled throughout these early printed herbals, most of the plants are simply shown cut off at the stem. The first of Prüss’ editions of Meydenbach’s Ortus Sanitatis, printed in Strasbourg in 1497, is the Smithsonian Libraries’ copy which has been scanned for the Biodiversity Heritage Library.   


A pot of basil: may this be symbolic or practical, whether signifying divine or earthly love, used as a culinary ingredient or insect repellent, to soothe a sad soul, or just a convenient place to store a lover’s severed head. The iconography of the image in printed books, manuscripts and paintings is yet to be fully explored. The bibliography of early printed herbals—endless editions, translations, fragments, versions, and reuse and copying of woodcuts—is a complex and difficult task to sort out. But the increasing number of scanned early herbals in the Biodiversity Heritage Library allows for easy exploration of these extremely rare works. Perhaps Prüss’ Ortus Sanitatis has a unique basil pot because of an inventive author/illustrator. The book does contain a woodcut of the human skeleton, the first appearance of one in an herbal.

Should you happen upon any, please send me your finds of illustrations of basil in a pot. Or, a picture of the herb growing in a container on your windowsill.    



















 


Notes

What is old is new again: basil oil from the local grocery store.
The first printed herbal to have illustrations is Macer Floridus’ De Viribus Herbarum (Milan, 1482). 

Di Pedacio Dioscoride Anazarbeo Libri cinque Della historia, et materia medicinale first appeared in 1544. It was soon reprinted many times in a variety of languages; there are several of these editions in the Smithsonian Libraries and many digitized versions in the Biodiversity Heritage Library (link to one here).

Blunt, Wilfrid and Sandra Raphael. The Illustrated Herbal. New York: Thames and Hudson, 1994.

Ray, Anthony. “The Rothschild ‘Alfabeguer’ and Other Fifteenth-Century Spanish Lustred ‘Basil-Pots’,” The Burlington Magazine, vol. 142, no. 1167 (June 2000), pages 371-375 (link here).

Poet John Keats picked up the narrative in “Isabella or, the Pot of Basil” (1818). In turn, British painters of the 19th century, most notably by the Pre-Raphaelite William Holman Hunt, were greatly inspired by the story. 
  
Painting of 1867, by William Holman Hunt. Laing Art Gallery, Newcastle upon Tyne, England (image from Wikimedia Commons)
She wrapp’d it up; and for its tomb did choose
A garden-pot, wherein she laid it by,
And cover’d it with mould, and o’er it set
Sweet Basil, which her tears kept ever wet.
And so she ever fed it with thin tears,
Whence thick, and green, and beautiful it grew,
So that it smelt more balmy than its peers
Of Basil-tufts in Florence; for it drew
Nurture besides, and life, from human fears,
From the fast mouldering head there shut from view:
So that the jewel, safely casketed,
Came forth, and in perfumed leafits spread.
"Isabella, or the Pot of Basil," painting by Joseph Severn (1793-1879), a close friend of Keats (image from Wikimedia Commons). Guildhall Art Gallery, London. 
Ocimum basilicum'Genovese Verde Migliorato'. The only variety for proper pesto.


Sir Joseph Dalton Hooker’s Antarctic Journal

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By Cam Sharp Jones 
Project Officer, the Joseph Hooker Correspondence Project
The Royal Botanic Gardens, Kew

2017 marks the bicentenary of Sir Joseph Dalton Hooker’s birth in the town of Halesworth in Suffolk, UK. During the course of his life (1817-1911), Hooker would become one of the most distinguished and lauded scientists of his day and would hold the position of Director of the Royal Botanic Gardens, Kew for 20 years (1865-1885).

Sir Joseph Dalton Hooker as a young man. Chalk portrait by George Richmond, 1855.

As part of Kew’s celebration of this important event, the Joseph Hooker Correspondence Project is pleased to announce that Hooker’s Antarctic Journal, the unpublished manuscript documenting his first major expedition, is now available online through our partner Biodiversity Heritage Library.

Hand written, the Journal is over 200 pages long and provides a detailed account of Hooker’s time as Assistant Surgeon on the HMS Erebus as part of Ross’s expedition to the Antarctic (1839-1843). The Journal also contains numerous pencil and watercolor sketches of the sights Joseph Hooker encountered during his 4 year adventure and provides important evidence for Hooker’s earlier interest in botanical science.

The voyage to the Antarctic was Hooker's first botanical expedition and he was aged just 22 on departure. The expedition lasted for four years, spending the winter months in New Zealand and Tasmania and then voyaging around the Antarctic continent during the summer months. The observations Hooker recorded in this journal and numerous other notebooks formed the basis of a flora of Antarctica and also of the wider regions visited.

Watercolour sketches of Mount Erebus and Mount Terror, names for the two ships that were part of the Ross expedition. The volcanos were first sighted on the 28th January 1841.

The Journal records much of the detail of Hooker’s time during the voyage and provides valuable insight into his scientific practices on board but also the day to day routine of the journey from the mundane to the hazardous. It also records Joseph’s feeling about the unique land and seascape of the region and the botanical discoveries he was making, which often left him awestruck. On a more whimsical note he also records the necessity for acquiring a taste for penguin soup, as the animals were the only source of fresh meat and were kept live on ship.

As part of the project to digitize the Journal, we have also assessed its conservation needs and undertaken necessary repairs and rehousing to ensure the long-time safety of this invaluable item. Prior to digitization, it was agreed that the early 20th century binding that housed the journal was not suitable and should be removed.

The Antarctic Journal during its assessment of what conservation it would need.

Once the binding was removed, it was discovered that the Journal was actually made up of a number of ‘volumes’ and certain pages had become loose.

The Journal unbound showing the different ‘volumes’ or ‘parts’ contained within the 20th century binding.

A number of the pages were also treated to stabilize the ink in a ‘bath’ to allow for more extensive repair work to be undertaken.

Pages from the Journal being treated to stabilize the ink.

Following this initial stage of the conservation, the Journal was digitized in preparation for its inclusion in the BHL online catalogue. It is hoped that by making the Journal freely available, a wider audience will be able to appreciate the important and valuable information contained in this unique item. This also speaks directly to the aims of the Joseph Hooker Correspondence Project, which is working to make Joseph Hooker’s correspondence freely available through the Project’s online portal.

We are now organizing for the Journal to be rebound sympathetically to its needs and in light of it being one of our most referenced Archival items here at the Royal Botanic Gardens, Kew.

We would like to thank Frederik Paulsen for supporting the conservation and digitization of Joseph Hooker’s Antarctic Journal and for helping to make it publicly available through the Biodiversity Heritage Library.

Related Links 

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The Botanical Art of Redouté

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Redouté, Pierre Joseph. Les liliacees. (1802-1815). v. 2. http://www.biodiversitylibrary.org/page/299211. Digitized by Missouri Botanical Garden.

The most celebrated flower painter of quite possibly the entire history of botanical art is Pierre-Joseph Redouté. Nicknamed "the Raphael of flowers," Redouté published over 2,100 plates depicting over 1,800 species - many of which had never before been illustrated for publication - throughout his career (University Libraries 2013). Many of Redouté's publications are available in the Biodiversity Heritage Library, and a selection of these works is examined in this article.

Born in 1759 at St. Hubert in the present-day Belgian province of Luxembourg, Redouté and his two brothers - who also became artists - were descended from a family of Belgian painters. After receiving training in his father's studio, Redouté set out at just thirteen years of age to earn a living as an artist. Eventually, in 1782 at the age of twenty-three, Pierre-Joseph joined his elder brother, Antoine-Ferdinand, designing stage scenery for the Théâtre-Italien in the rue de Louvois (Blunt 1967).

Redouté, Pierre Joseph. Les liliacees. (1802-1815). v.  6. http://www.biodiversitylibrary.org/page/300521. Digitized by Missouri Botanical Garden.

During this period, Pierre-Joseph's leisure time was spent painting flowers, and it was this passion that eventually led him to the Jardin du Roi, which today is known as Jardin des Plantes and is part of the Muséum national d’histoire naturelle. It was here that Redouté met and befriended Dutch painter Gerard van Spaendonck, Professeur de peinture de fleurs at the Jardin. van Spaendonck had a profound influence on Redouté, instructing him on engraving and water coloring techniques. In fact, Wilfrid Blunt, author of The Art of Botanical Illustration, asserts that Redouté owes much of his success to the technical discoveries that he learned from van Spaendonck (Blunt 1967).

Redouté's technique, modeled upon that of van Spaendonck, involved "pure water colour, gradated with infinite subtlety and very occasionally touched with body-colour to suggest sheen" (Blunt 1967, 179). Redouté eventually perfected the reproduction of his paintings for publication using stipple engraving, which used dots, rather than lines, to engrave plates, with varying dot density being used to convey tone and shading (Blunt 1967).

L'Héritier de Brutelle, Charles Louis. Stirpes novae :aut minus cognitae, quas descriptionibus et iconibus. (1784-85). Art by Pierre-Joseph Redouté. http://www.biodiversitylibrary.org/page/12516529. Digitized by Missouri Botanical Garden.

During his time creating botanical drawings for the Jardin du Roi, Redouté came to the attention of wealthy botanist Charles Louis L’Héritier de Brutelle, who instructed him on plant anatomy and the characteristics necessary for detailed botanical study. As a result of this relationship, L’Héritier enlisted Redouté to illustrate more than fifty plates for his Stirpes novae (1784–1785), which has been digitized in BHL by the Missouri Botanical Garden (Blunt 1967). With this work, L’Héritier intended to describe, illustrate, and classify according to the Linnaean system plants new or largely unknown to science at the time. This included specimens collected during the Dombey-Ruiz-Pavón expedition to Chile and Peru and plants found at Kew Gardens, Jardin du Roi, and other European gardens (Dumbarton Oaks 2016). Several years later, Redouté also produced plates for L’Héritier's Sertum Anglicum (1788), also digitized by the Missouri Botanical Garden, which included studies of rare plants growing at Kew Gardens (Blunt 1967). James Sowerby, another renowned English illustrator, also produced illustrations for this work (Mathew 1981).

L'Héritier de Brutelle, Charles Louis. Sertum Anglicum, seu, Plantae rariores quae in hortis juxta Londinum. (1788). Art by Pierre-Joseph Redouté. http://www.biodiversitylibrary.org/page/11832434. Digitized by Missouri Botanical Garden.

In the late 1780s, likely at the recommendation of L’Héritier, Redouté was appointed Draughtsman to the Cabinet of Marie-Antoinette. During this time, L’Héritier proposed the production of Plantarum historia succulentarum (Histoire des plantes grasses), a work on cacti and succulent plants that would be illustrated by Redouté. While the French Revolution undermined L’Héritier's ability to sponsor the project, an enterprising publisher, Garnéry, was enlisted to undertake the publication (Mathew 1981) and Swiss botanist Augustin Pyramus de Candolle was selected as the contributor of the descriptive text. The first section of Plantarum historia succulentarum was published in 1799, and publication continued intermittently until 1837 (Missouri Botanical Garden 2003). This was the first botanical publication for which Redouté was the sole artist and the first to utilize his color-printing method of stipple-engraved plates (Mathew 1981). It has been digitized by Missouri Botanical Garden.

Candolle, Augustin Pyramus de. Plantarum historia succulentarum =Histoire des plantes grasses. (1799-1837). v. 2. Art by Pierre-Joseph Redouté. http://www.biodiversitylibrary.org/page/281073. Digitized by Missouri Botanical Garden.

Following the French Revolution, Redouté continued painting for the Jardin du Roi, and the rise of Napoleon Bonaparte resulted in increased fame for Redouté as Joséphine Bonaparte's court artist (Dumbarton Oaks 2016). Bonaparte married Joséphine de Beauharnais in 1796, and a few years later, Joséphine purchased Chateau de Malmaison near the western bank of the Seine. Joséphine set out to create magnificent gardens filled with rare and exotic plants from the Old and New Worlds, and in this venture she committed massive sums towards the procurement and cultivation of "choice flowers" and the production of extravagant publications about her gardens, for which Redouté contributed some of the most celebrated art in the history of botanical illustration (Blunt 1967).

Ventenat, É. P. Jardin de la Malmaison. (1803-1804). Art by Pierre-Joseph Redouté. v. 1. http://www.biodiversitylibrary.org/page/43441869. Digitized by Smithsonian Libraries.

The first of these publications was Jardin de la Malmaison, for which Redouté produced several hundred plant portraits exemplifying scientific precision and artistic mastery. These portraits, painted on parchment, were reproduced for publication using copperplate stipple engraving. Joséphine hired botanist Étienne Pierre Ventenat to identify and describe the plants at Malmaison. The resulting work was published in twenty installments of about 150 copies between 1803-1804 (Lack 2001). It has been digitized in BHL by Smithsonian Libraries.

Ventenat, É. P. Jardin de la Malmaison. (1803-1804). Art by Pierre-Joseph Redouté. v. 2. http://www.biodiversitylibrary.org/page/43518674. Digitized by Smithsonian Libraries.

A description of the plants at Malmaison was continued in Description des plantes rares cultivees a Malmaison et a Navarre. Following his divorce from Joséphine, Napoleon presented her with the country estate of Navarre near Évreux in Normandy. Here, Joséphine again set out to create a magnificent garden of rare plants. With Étienne Pierre Ventenat deceased, she engaged botanist Aime Bonpland to continue the description of her plants. Redouté and Pancrace Bessa, also a student of van Spaendonck's, produced watercolor paintings to illustrate Description des plantes rares cultivees a Malmaison et a Navarre, which was published in a print run of 325 copies between 1812-1817 (Lack 2001). It has been digitized by Missouri Botanical Garden.

Bonpland, Aimé. Description des plantes rares cultivees a Malmaison et a Navarre. (1812-1817). Art by Pierre-Joseph Redouté. http://www.biodiversitylibrary.org/page/275897. Digitized by Missouri Botanical Garden.

During this period, the renowned Les liliacees was also published. This eight-volume work (digitized by Missouri Botanical Garden), published between 1802-1815, presents a collection of over 450 watercolors by Redouté. Botanical descriptions for the work were provided by Augustin Pyramus de Candolle (volumes 1-4), François de Laroche (volumes 5-7), and Alire Raffeneau-Delile (volume 8). The watercolors were reproduced using stipple plate engraving finished by hand. While the title may be Les liliacees, the work actually covers many other petaloid monocotyledons found in French gardens at this time, including Iridaceae, Commelinaceae, and Amaryllidaceae (Mathew 1981). Redouté pays homage to Joséphine, a major patron of the work, by renaming an amaryllis Amaryllis Josephinae, which is depicted in the only folding plate in the publication (Christie's 1997).

Amaryllis JosephinaeRedouté, Pierre Joseph. Les liliacees. (1802-1815). v. 7. http://www.biodiversitylibrary.org/page/300907. Digitized by Missouri Botanical Garden.

Publication of Redouté's arguably most-popular work, Les roses, began in 1817. This work, published in three volumes between 1817-1824, describes and depicts roses found in the Malmaison gardens, the collections of botanist Claude Antoine Thory (who provided the text for this work), and other gardens around Paris. It not only describes many flowers that are the forerunners of today's roses, but it also includes species and cultivars that are no longer in existence (Christie's 2008). This work was reprinted twice over the course of a few short years, and the third edition, published between 1828-1835, has been digitized by Biblioteca Digital del Real Jardin Botanico de Madrid and can be accessed through BHL.

Redouté, Pierre Joseph. Les Roses. 3rd Ed. v. 2 (1835). http://www.biodiversitylibrary.org/bibliography/75996. Digitized by Biblioteca Digital del Real Jardin Botanico de Madrid.

While Redouté continued to enjoy fame throughout his career, producing not only sought-after paintings but also tutoring many distinguished pupils, his extravagant spending habits led him to financial embarrassment, requiring him to sell furniture, silver, and paintings in an attempt to satisfy his debts. At eighty years of age, he began planning the production of a magnificent flower picture that would command an astonishing sum. Sadly, he was never able to realize this ambition. On June 19, 1840, he suffered a stroke and died the following day (Blunt 1967).

Redouté, Pierre Joseph. Les liliacees. (1802-1815). v. 5. http://www.biodiversitylibrary.org/page/300394. Digitized by Missouri Botanical Garden.

Today, Redouté is remembered as one of the greatest botanical illustrators in history. His original watercolors and related publications can fetch incredible prices at auction. For example, 468 of his original watercolors for Les liliacees sold at auction in 1985 for 5.5 million USD (Reif 1985). Thanks to the contributions of our incredible partners, you can access many of Redouté's works for free in BHL and even download and print your own copies of his masterpieces. What was once available only to the rich is now freely available to the world.

Bonpland, Aimé. Description des plantes rares cultivees a Malmaison et a Navarre. (1812-1817). Art by Pierre-Joseph Redouté. http://www.biodiversitylibrary.org/page/275935. Digitized by Missouri Botanical Garden.


By: Grace Costantino
Outreach and Communication Manager
Biodiversity Heritage Library

References

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